is_deeply $r->{endLocations}, [6], 'align->{endLocations}';
is_deeply $r->{startLocations}, [0], 'align->{startLocations}';
is_deeply $r->{alignment}, [3, 0, 0, 0, 3, 0, 2], 'align->{alignment}';
is_deeply $r->{endLocations}, [6], 'align->{endLocations}';
is_deeply $r->{startLocations}, [0], 'align->{startLocations}';
is_deeply $r->{alignment}, [3, 0, 0, 0, 3, 0, 2], 'align->{alignment}';